Pooling Calculator

An easy-to-use online tool to calculate optimal sample pools for Illumina sequencing, helping labs save costs and improve efficiency.

Illustration of a DNA pooling processA modern flat design SVG showing interconnected DNA sample tubes and sequencing pools, symbolizing pooling calculations for Illumina sequencing.

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About This Tool

This pooling calculator is designed for genomic researchers and biotech professionals who perform Illumina sequencing. By inputting parameters such as the total number of samples, preferred sequencing platform, desired coverage depth, and multiplexing limits, users receive optimized pooling strategies that improve resource allocation. The tool simplifies complex calculations involved in sequencing pool design, factoring in platform-specific characteristics and constraints. It supports quick decision-making, cost estimation, and planning for large-scale genomic projects. Advanced options include accounting for DNA fragment sizes and index hopping risks, giving researchers detailed insights into their sequencing setups and efficiencies. Whether managing small or large sample cohorts, this calculator ensures precise, effective pooling—saving time, reducing costs, and increasing data quality.

How to Use

1. Enter total number of samples to sequence.
2. Select your Illumina platform from the dropdown menu.
3. Input desired coverage depth per sample.
4. Specify the multiplexing limit per run.
5. Optional: Adjust DNA fragment size if relevant.
6. Click the 'Calculate' button to view optimized pooling details.

FAQs/Additional Resources

Find Quick Answers

What is sample pooling in Illumina sequencing?

How does this calculator optimize pooling strategies?

Can I customize parameters for different DNA fragment sizes?

Does the calculator estimate sequencing costs?

Is this tool suitable for small-scale or large-scale projects?

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